Introduction to Eukaryotic genome annotation

Teacher:
Jacques Dainat, Ph.D.
NBIS (National Bioinformatics Infrastructure Sweden)
Genome Annotation Service
http://nbis.se/about/staff/jacques-dainat/
http://nbis.se

Schedule

Click the heading of a topic to see the lecture slides or lab instructions.

---

Thursday

data access: https://u-ip-81-109.hpc2n.umu.se/tickets/WUZJrx-nDRNrfwFdrii6ehXQZva-fJAOJmS6lzQasjs/annotation_course.tar.gz/download

09.00-10.00: Lecture: Structural annotation overwiew
10.00-10.15: Coffee break
10.15-11.30: Practical 1: Assembly assessment + Abinitio annotation
11.30-12.30: Lunch
12.30-13.00: Lecture: MAKER annotation pipeline
13.00-16.00: Practical 2: Structural annotation with MAKER (incl. coffee break)

---

Friday

09.00-09.15: Summary of yesterday’s exercise
09.15-09.30: Lecture: Introduction to manual curation
10.00-12.00: Practical 3: Manual curation(incl. coffee break)
11.30-12.30: Lunch
12.30-13.00: Lecture: Functional annotation
13.00-15.30: Practical 4: Functional annotation (incl. coffee break)
15.30-16.00: Wrap-up

---